| Title | Place | Country |
| Efficient Approaches for Retrieving Protein Tertiary Structures | IEEE/ACM Transactions on Computational Biology and Bioinformatics (accepted) | |
| Hidden Markov Models for classifying protein secondary and tertiary structures | Journal of Convergence (JOC) | |
| Hierarchical Protein Classification based on Gene Ontology and Decision Trees | Proceedings of ICT Innovations 2010 | Macedonia |
| Incorporating Several Features in the Protein Ray Descriptor for More Accurate Protein 3D Structure Retrieval | ACM Multimedia 2010 Conference, ACM Workshop on 3D Object Retrieval | Italy |
| Learning classification diatom models in Lake Prespa using novel algorithm | 8th Int. Bioinformatics workshop | China |
| An improvement of the protein ray based descriptor by incorporating the ASA, RASA and hydrophobicity features | 8th Int. Bioinformatics workshop | China |
| A Protein Classifier Based on SVM by Using the Voxel Based Descriptor | 7th International Conference on Rough Sets and Current Trends in Computing, LNCS 6086, Springer-Verlag Berlin Heidelberg 2010 | Poland |
| Automated Structural Classification of Proteins by Using Decision Trees and Structural Protein Features | Proceedings of ICT Innovations 2009, Springer-Verlag Berlin Heidelberg 2009 | Macedonia |
| Protein Classification Based on 3D Structures and Fractal Features | Proceedings of ICT Innovations 2009, Springer-Verlag Berlin Heidelberg 2009 | Macedonia |
| HMM based approach for classifying protein structures | International Journal of Bio-Science and Bio-Technology | |
| Application of Edge Histogram Descriptor and Region Shape Descriptor to MRIs | ICT Innovations 2009 | Macedonia |
| HMM Approach for Classifying Protein Structures | Future Generation Information Technology, LNCS 5899, Springer-Verlag Berlin Heidelberg 2009 | Korea |
| SGNG Protein Classifier by matching 3D structures | Proceeding of 4-th International Conference on Hybrid Artificial Intelligence Systems, LNAI 5572, Springer-Verlag Berlin Heidelberg 2009 | Spain |
| An Efficient Approach in Comparing Protein Structures using Matrix Alignment Techniques | Proc.of International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics | Florida, USA |
| Comparative Analysis of three efficient approaches for retrieving protein 3D structures | Proceeding of 4-th IEEE Cairo International Biomedical Engineering Conference | Egypt |
| Efficient protein classification by using 3D structure content representation | Proceeding of IASTED International Conference on Artificial Intelligence and Soft Computing 2008 | Spain |
| Protein Classification by Matching 3D Structures | Proceeding of IEEE Conference Frontiers in the Convergence of Bioscience and Information Technologies | Korea |
| Protein Retrieval by Matching 3D Structures | 8th National Conference ETAI | Macedonia |